{"id":1018,"date":"2026-06-16T22:51:31","date_gmt":"2026-06-16T22:51:31","guid":{"rendered":"https:\/\/www.smreza.com\/profile\/?p=1018"},"modified":"2026-09-19T04:25:54","modified_gmt":"2026-09-19T04:25:54","slug":"biomedical-image-segmentation","status":"publish","type":"post","link":"https:\/\/www.smreza.com\/profile\/research-projects\/biomedical-image-segmentation\/","title":{"rendered":"Biomedical Image Segmentation"},"content":{"rendered":"\n

This project focuses on developing advanced machine learning and computer vision techniques for accurate segmentation of biomedical images, including 2D and 3D datasets. The goal is to enable automated extraction of anatomical structures to support scientific discovery, clinical decision-making, and large-scale biological data analysis. <\/p>\n\n\n\n

A in-house developed Digital Twin: https:\/\/projects.smreza.com\/zebrafish-digital-twin\/<\/a><\/p>\n\n\n\n

A in-house developed Zebrafish Atlas: https:\/\/projects.smreza.com\/zebrafish-atlas\/<\/a><\/p>\n\n\n\n

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\n\t\t\t\t\t\t\n\t\t\t\t\n\t\t\t\t\t\t\t\t\t\n\t\t\t\t\t\tRecent News on this projects\t\t\t\t\t<\/span>\n\t\t\t\t\t\n\t\t\t\t\t\t\t<\/a>\n\n\t\t\t\t\t<\/h2>\t\t\t<\/span>\n\n\t\t\t\n\t\t<\/div>\n\n\t\t\n\t\t <\/div>\n\n
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D3M Lab Student Wins First Place at the 2026 ICDS Symposium Research Poster Competition<\/a><\/h3><\/div>\n\t\t\t
\n\t\t\t\t\t\t\t\t\n\n\t\t\t\t<\/i>By<\/span>Sayed Mohsin Reza<\/a>\t\t\t<\/span>\n\t\t\t\t\t\t\n\t\t\t\t<\/i>Award<\/a>,<\/span>Biomedical Image Segmentation<\/a>,<\/span>Highlights<\/a>,<\/span>Machine Learning<\/a>,<\/span>News<\/a>,<\/span>Research Projects<\/a>\t\t\t<\/span>\n\t\t\t\t\t\t\n\t\t\t\t<\/i>\t\t\t\t\t\t\t\t\t\n\t\t\t\t\tOctober 15, 2026\t\t\t\t<\/a>\n\t\t\t\t\t\t\t<\/span>\n\t\t\t <\/div>\n\t\t\t\n\t\t\t
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\n\t\t\t\t\t\t\tThe Data-Driven Decision Making (D3M) Lab is pleased to announce that undergraduate researcher Dhruv… <\/div>\n\t\t\t\t\t\t\t\t\t\t <\/div>\n\t\t\t\t\t
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\n\t\t\t\t\tRead More<\/a>\t\t\t\t<\/div>\n\t\t\t<\/div>\n\t\t<\/div>\n\t\t <\/div>\n <\/div>\n<\/div>\n
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MCREU 2026: 2 Students Successfully Completed MCREU Research Projects; Dhruv Earns Peer Review Excellence Award<\/a><\/h3><\/div>\n\t\t\t
\n\t\t\t\t\t\t\t\t\n\n\t\t\t\t<\/i>By<\/span>Sayed Mohsin Reza<\/a>\t\t\t<\/span>\n\t\t\t\t\t\t\n\t\t\t\t<\/i>Biomedical Image Segmentation<\/a>,<\/span>News<\/a>,<\/span>Personality Disorders<\/a>,<\/span>Research Projects<\/a>\t\t\t<\/span>\n\t\t\t\t\t\t\n\t\t\t\t<\/i>\t\t\t\t\t\t\t\t\t\n\t\t\t\t\tAugust 4, 2026\t\t\t\t<\/a>\n\t\t\t\t\t\t\t<\/span>\n\t\t\t <\/div>\n\t\t\t\n\t\t\t
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\n\t\t\t\t\t\t\tTwo undergraduate researchers from the Data-Driven Decision Making (D3M) Lab successfully completed… <\/div>\n\t\t\t\t\t\t\t\t\t\t <\/div>\n\t\t\t\t\t
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\n\t\t\t\t\t\t\t\t\t\t\t\"2026\n\t\t\t\t\t\t\n\t\t\t\t\t\t\t\n\t\t<\/a>\n\t\t\t\t
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Five Lab Students Present Research at Penn State Undergraduate Exhibition 2026<\/a><\/h3><\/div>\n\t\t\t
\n\t\t\t\t\t\t\t\t\n\n\t\t\t\t<\/i>By<\/span>Sayed Mohsin Reza<\/a>\t\t\t<\/span>\n\t\t\t\t\t\t\n\t\t\t\t<\/i>Biomedical Image Segmentation<\/a>,<\/span>Electricity Market<\/a>,<\/span>Machine Learning<\/a>,<\/span>News<\/a>,<\/span>Personality Disorders<\/a>,<\/span>Power Distribution Fault Pattern<\/a>,<\/span>Quantum AI<\/a>,<\/span>Research Projects<\/a>,<\/span>Tick Borne Pathogen Transmission Data<\/a>\t\t\t<\/span>\n\t\t\t\t\t\t\n\t\t\t\t<\/i>\t\t\t\t\t\t\t\t\t\n\t\t\t\t\tApril 22, 2026\t\t\t\t<\/a>\n\t\t\t\t\t\t\t<\/span>\n\t\t\t <\/div>\n\t\t\t\n\t\t\t
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\n\t\t\t\t\t\t\t5 Members of the Data\u2011Driven Decision Making (D3M) Lab presented four research projects at the Penn… <\/div>\n\t\t\t\t\t\t\t\t\t\t <\/div>\n\t\t\t\t\t
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\n\t\t\t\t\tRead More<\/a>\t\t\t\t<\/div>\n\t\t\t<\/div>\n\t\t<\/div>\n\t\t <\/div>\n <\/div>\n<\/div>\n
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Two Lab Students Receive MCREU for Summer 2026<\/a><\/h3><\/div>\n\t\t\t
\n\t\t\t\t\t\t\t\t\n\n\t\t\t\t<\/i>By<\/span>Sayed Mohsin Reza<\/a>\t\t\t<\/span>\n\t\t\t\t\t\t\n\t\t\t\t<\/i>Biomedical Image Segmentation<\/a>,<\/span>News<\/a>,<\/span>Personality Disorders<\/a>,<\/span>Research Projects<\/a>\t\t\t<\/span>\n\t\t\t\t\t\t\n\t\t\t\t<\/i>\t\t\t\t\t\t\t\t\t\n\t\t\t\t\tMarch 28, 2026\t\t\t\t<\/a>\n\t\t\t\t\t\t\t<\/span>\n\t\t\t <\/div>\n\t\t\t\n\t\t\t
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\n\t\t\t\t\t\t\tTwo students from the Data\u2011Driven Decision Making (D3M) Lab have been selected for the Multi\u2011Campus… <\/div>\n\t\t\t\t\t\t\t\t\t\t <\/div>\n\t\t\t\t\t
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\n\t\t\t\t\tRead More<\/a>\t\t\t\t<\/div>\n\t\t\t<\/div>\n\t\t<\/div>\n\t\t <\/div>\n <\/div>\n<\/div>\n
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\n\t\t\t\t\t\t\t\t\t\t\t\"OVPCC\n\t\t\t\t\t\t\n\t\t\t\t\t\t\t\n\t\t<\/a>\n\t\t\t\t
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OVPCC Excellence in Interdisciplinary Research Seed Grant Awarded for Automated 2D\/3D Zebrafish Segmentation Using Deep Learning<\/a><\/h3><\/div>\n\t\t\t
\n\t\t\t\t\t\t\t\t\n\n\t\t\t\t<\/i>By<\/span>Sayed Mohsin Reza<\/a>\t\t\t<\/span>\n\t\t\t\t\t\t\n\t\t\t\t<\/i>Biomedical Image Segmentation<\/a>,<\/span>Grants<\/a>,<\/span>Highlights<\/a>,<\/span>News<\/a>,<\/span>Research Projects<\/a>\t\t\t<\/span>\n\t\t\t\t\t\t\n\t\t\t\t<\/i>\t\t\t\t\t\t\t\t\t\n\t\t\t\t\tNovember 5, 2025\t\t\t\t<\/a>\n\t\t\t\t\t\t\t<\/span>\n\t\t\t <\/div>\n\t\t\t\n\t\t\t
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\n\t\t\t\t\t\t\tWe are thrilled to announce that Dr. Sayed Reza, Assistant Professor of Computer Science has been… <\/div>\n\t\t\t\t\t\t\t\t\t\t <\/div>\n\t\t\t\t\t
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\n\t\t\t\t\tRead More<\/a>\t\t\t\t<\/div>\n\t\t\t<\/div>\n\t\t<\/div>\n\t\t <\/div>\n <\/div>\n<\/div> <\/div>\n\n\t\t\t\t\n <\/div>\n <\/div>\n\t\t","protected":false},"excerpt":{"rendered":"

This project focuses on developing advanced machine learning and computer vision techniques for accurate segmentation of biomedical images, including 2D and 3D datasets. The goal is to enable automated extraction of anatomical structures to support scientific discovery, clinical decision-making, and large-scale biological data analysis. A in-house developed Digital Twin: https:\/\/projects.smreza.com\/zebrafish-digital-twin\/ A in-house developed Zebrafish Atlas: […]<\/p>\n","protected":false},"author":1,"featured_media":955,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"_monsterinsights_skip_tracking":false,"footnotes":""},"categories":[105,19],"tags":[],"class_list":["post-1018","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-projects","category-research-projects"],"rttpg_featured_image_url":{"full":["https:\/\/www.smreza.com\/profile\/wp-content\/uploads\/2026\/06\/zebragish-3d-segmentation.png",1536,746,false],"landscape":["https:\/\/www.smreza.com\/profile\/wp-content\/uploads\/2026\/06\/zebragish-3d-segmentation.png",1536,746,false],"portraits":["https:\/\/www.smreza.com\/profile\/wp-content\/uploads\/2026\/06\/zebragish-3d-segmentation.png",1536,746,false],"thumbnail":["https:\/\/www.smreza.com\/profile\/wp-content\/uploads\/2026\/06\/zebragish-3d-segmentation-150x150.png",150,150,true],"medium":["https:\/\/www.smreza.com\/profile\/wp-content\/uploads\/2026\/06\/zebragish-3d-segmentation-300x146.png",300,146,true],"large":["https:\/\/www.smreza.com\/profile\/wp-content\/uploads\/2026\/06\/zebragish-3d-segmentation-1024x497.png",1024,497,true],"1536x1536":["https:\/\/www.smreza.com\/profile\/wp-content\/uploads\/2026\/06\/zebragish-3d-segmentation.png",1536,746,false],"2048x2048":["https:\/\/www.smreza.com\/profile\/wp-content\/uploads\/2026\/06\/zebragish-3d-segmentation.png",1536,746,false]},"rttpg_author":{"display_name":"Sayed Mohsin Reza","author_link":"https:\/\/www.smreza.com\/profile\/author\/smreza\/"},"rttpg_comment":0,"rttpg_category":"Projects<\/a> Research Projects<\/a>","rttpg_excerpt":"This project focuses on developing advanced machine learning and computer vision techniques for accurate segmentation of biomedical images, including 2D and 3D datasets. The goal is to enable automated extraction of anatomical structures to support scientific discovery, clinical decision-making, and large-scale biological data analysis. A in-house developed Digital Twin: https:\/\/projects.smreza.com\/zebrafish-digital-twin\/ A in-house developed Zebrafish Atlas:…","_links":{"self":[{"href":"https:\/\/www.smreza.com\/profile\/wp-json\/wp\/v2\/posts\/1018","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.smreza.com\/profile\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.smreza.com\/profile\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.smreza.com\/profile\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.smreza.com\/profile\/wp-json\/wp\/v2\/comments?post=1018"}],"version-history":[{"count":5,"href":"https:\/\/www.smreza.com\/profile\/wp-json\/wp\/v2\/posts\/1018\/revisions"}],"predecessor-version":[{"id":1157,"href":"https:\/\/www.smreza.com\/profile\/wp-json\/wp\/v2\/posts\/1018\/revisions\/1157"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/www.smreza.com\/profile\/wp-json\/wp\/v2\/media\/955"}],"wp:attachment":[{"href":"https:\/\/www.smreza.com\/profile\/wp-json\/wp\/v2\/media?parent=1018"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.smreza.com\/profile\/wp-json\/wp\/v2\/categories?post=1018"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.smreza.com\/profile\/wp-json\/wp\/v2\/tags?post=1018"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}